STRINGSTRING
Psed_5598 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5598" - PDZ/DHR/GLGF domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5598PDZ/DHR/GLGF domain-containing protein (355 aa)    
Predicted Functional Partners:
Psed_1121
Hypothetical protein (514 aa)
 
          0.750
Psed_4283
ferredoxin-NADP reductase (334 aa)
 
          0.646
Psed_2012
DNA polymerase III subunit delta (342 aa)
 
        0.628
Psed_0468
Cell envelope-related transcriptional attenuator (786 aa)
   
          0.587
Psed_2814
DivIVA domain-containing protein (286 aa)
   
          0.573
Psed_5599
ATP-dependent helicase HrpB (810 aa)
              0.563
Psed_1891
Aminopeptidase (863 aa)
   
        0.550
Psed_3492
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (85 aa)
   
          0.546
Psed_5153
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (83 aa)
   
          0.545
Psed_3822
HAD-superfamily hydrolase (352 aa)
   
        0.542
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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