STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5598PDZ/DHR/GLGF domain protein; KEGG: sen:SACE_1100 PDZ/DHR/GLGF. (355 aa)    
Predicted Functional Partners:
Psed_0979
PFAM: DNA helicase, UvrD/REP type; KEGG: amd:AMED_8980 putative helicase.
  
     0.607
Psed_3148
PFAM: DNA helicase, UvrD/REP type; KEGG: ami:Amir_1311 superfamily I DNA and RNA helicase-like protein.
  
     0.585
Psed_2012
DNA polymerase III, delta subunit; KEGG: svi:Svir_12630 hypothetical protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta.
 
     0.584
whiB-5
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.546
Psed_3162
Regulatory protein MerR; KEGG: req:REQ_24440 MerR family transcriptional regulator; manually curated; SMART: HTH transcriptional regulator, MerR.
  
     0.534
Psed_3822
KEGG: sen:SACE_5252 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase.
  
     0.509
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
     0.506
Psed_5599
TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: amd:AMED_1284 ATP-dependent helicase HrpB; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain.
       0.503
Psed_0468
KEGG: sen:SACE_7090 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator.
  
     0.496
Psed_1121
KEGG: sen:SACE_1099 hypothetical protein; TIGRFAM: Protein of unknown function DUF2342; PFAM: Protein of unknown function DUF2342.
 
     0.496
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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