STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5613KEGG: gob:Gobs_4422 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Psed_0882
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
 
 
 0.595
Psed_5610
PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: sen:SACE_6933 thiol-disulfide isomerase/thioredoxin.
     
 0.584
Psed_5611
KEGG: gbr:Gbro_1035 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.
       0.584
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: nfa:nfa51600 glutamate-1-semialdehyde aminotransferase.
       0.571
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.543
Psed_5614
KEGG: bcv:Bcav_0688 hypothetical protein.
     
 0.542
Psed_4722
Hypothetical protein; KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA.
 
   
 0.516
Psed_2946
KEGG: cai:Caci_5446 hypothetical protein.
 
   0.505
Psed_0946
KEGG: sen:SACE_0923 hypothetical protein.
    
 
 0.502
Psed_4881
KEGG: sen:SACE_0923 hypothetical protein.
    
 
 0.502
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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