STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5728Hypothetical protein; Manually curated; KEGG: tcu:Tcur_2634 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Psed_5729
KEGG: sen:SACE_0561 hypothetical protein.
       0.779
Psed_0554
KEGG: gob:Gobs_2136 hypothetical protein.
  
     0.695
Psed_0358
PFAM: Domain of unknown function DUF397; KEGG: svi:Svir_12060 protein of unknown function (DUF397).
  
     0.575
Psed_5730
KEGG: sen:SACE_0562 hypothetical protein.
       0.542
Psed_5731
KEGG: amd:AMED_1865 hypothetical protein.
       0.542
Psed_0472
KEGG: tfu:Tfu_1551 hypothetical protein.
  
     0.511
Psed_5534
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: amd:AMED_6149 integrase.
 
     0.489
Psed_2777
KEGG: gob:Gobs_4779 hypothetical protein.
  
     0.457
Psed_0547
PFAM: Acetoacetate decarboxylase; KEGG: sro:Sros_1360 hypothetical protein.
  
     0.432
Psed_3683
KEGG: sen:SACE_4324 hypothetical protein.
  
     0.421
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.