STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5949KEGG: amd:AMED_8323 hypothetical protein. (429 aa)    
Predicted Functional Partners:
Psed_5942
PFAM: Protein of unknown function DUF2064; KEGG: saq:Sare_2754 hypothetical protein.
 
   
 0.908
Psed_5940
UDP-glucose 4-epimerase; KEGG: mau:Micau_3949 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
 
  
 0.906
Psed_5941
KEGG: sen:SACE_3341 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2.
 
   
 0.894
Psed_5943
PFAM: Methyltransferase type 12; KEGG: sen:SACE_3339 putative SAM-dependent methyltransferase.
 
   
 0.838
Psed_5947
KEGG: mjl:Mjls_0708 oxidoreductase, molybdopterin binding; manually curated; PFAM: Oxidoreductase, molybdopterin-binding domain.
 
     0.829
Psed_6235
PFAM: Polyketide cyclase/dehydrase; KEGG: amd:AMED_7647 cyclase/dehydrase.
  
     0.691
Psed_4224
PFAM: Polyketide cyclase/dehydrase; KEGG: sma:SAV_7402 cyclase/dehydrase.
  
     0.686
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
   
    0.680
Psed_6595
PFAM: GTP-binding protein, HSR1-related; KEGG: ach:Achl_3083 putative GTPase of unknown function.
  
    0.574
Psed_4009
PFAM: UspA; KEGG: sma:SAV_7295 hypothetical protein.
  
     0.524
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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