STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6063TIGRFAM: Muconolactone delta-isomerase; KEGG: rer:RER_54210 muconolactone isomerase; PFAM: Muconolactone delta-isomerase. (95 aa)    
Predicted Functional Partners:
Psed_6064
SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rha:RHA1_ro02372 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal.
 
 
 0.994
Psed_0821
SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rer:RER_54220 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal.
 
 
 0.976
Psed_3094
SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rop:ROP_20860 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal.
 
 
 0.976
Psed_6065
TIGRFAM: Catechol 1,2-dioxygenase, actinobacteria; KEGG: rha:RHA1_ro02373 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal.
 
  
 0.929
Psed_1521
PFAM: Carboxymuconolactone decarboxylase; KEGG: tcu:Tcur_3347 3-oxoadipate enol-lactonase.
    
 0.906
Psed_3744
PFAM: Carboxymuconolactone decarboxylase; KEGG: slo:Shew_2734 4-carboxymuconolactone decarboxylase.
    
 0.906
Psed_6460
PFAM: Carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_PC0000387 gamma-carboxymuconolactone decarboxylase protein.
    
 0.906
Psed_0123
PFAM: Carboxymuconolactone decarboxylase; KEGG: scb:SCAB_90371 hypothetical protein.
     
  0.900
Psed_0765
PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: gob:Gobs_1295 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal.
 
 
 0.897
Psed_6052
TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: rxy:Rxyl_1578 3-oxoadipate enol-lactonase; PFAM: Alpha/beta hydrolase fold-1.
 
 
 0.831
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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