STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6114PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: sro:Sros_5976 iron transport/utilisation related protein. (291 aa)    
Predicted Functional Partners:
Psed_5064
(2,3-dihydroxybenzoyl)adenylate synthase; KEGG: saq:Sare_4933 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
 
  
 0.632
Psed_2630
Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: mil:ML5_4831 abc transporter related protein; SMART: ATPase, AAA+ type, core.
   
 
 0.630
Psed_4060
Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; KEGG: cai:Caci_5807 ABC transporter related; SMART: ATPase, AAA+ type, core.
   
   0.628
Psed_0252
Amino acid adenylation domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; Polyketide synthase, thioesterase domain; TIGRFAM: Amino acid adenylation; Non-ribosomal peptide synthase; KEGG: msm:MSMEG_0019 amino acid adenylation; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Condensation domain; Thioesterase.
  
  
 0.605
Psed_6339
(2,3-dihydroxybenzoyl)adenylate synthase; KEGG: nfa:nfa21960 putative acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.
 
  
 0.579
Psed_6448
(2,3-dihydroxybenzoyl)adenylate synthase; KEGG: nfa:nfa21960 putative acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.
 
  
 0.578
Psed_1756
Helix-turn-helix domain-containing protein AraC type; KEGG: sus:Acid_4192 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
  
 0.500
Psed_3995
ABC-type transporter, periplasmic subunit; PFAM: Periplasmic binding protein; KEGG: req:REQ_03550 substrate binding lipoprotein.
 
  
 0.485
Psed_6113
ATPase AAA-2 domain protein; KEGG: sen:SACE_0414 putative ATP-dependent Clp protease; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family.
       0.458
Psed_6115
KEGG: ami:Amir_0330 hypothetical protein.
       0.455
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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