STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6255PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04494 potassium uptake protein. (370 aa)    
Predicted Functional Partners:
Psed_6254
KEGG: sti:Sthe_1229 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
 
     0.852
Psed_6232
PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; KEGG: scl:sce8999 hypothetical protein.
 
   
 0.635
Psed_6285
KEGG: bge:BC1002_5635 hypothetical protein.
 
   
 0.630
Psed_1625
KEGG: bge:BC1002_5635 hypothetical protein.
 
   
 0.629
Psed_3640
KEGG: mch:Mchl_5398 hypothetical protein.
 
     0.528
Psed_5106
KEGG: msl:Msil_1993 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
     0.526
Psed_6256
KEGG: shl:Shal_0400 hypothetical protein.
       0.495
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.490
Psed_1627
PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: azc:AZC_0070 putative histone acetyltransferase.
 
   
 0.485
Psed_3252
PFAM: Monooxygenase, FAD-binding; KEGG: sna:Snas_4581 monooxygenase FAD-binding protein.
 
 
 0.442
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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