Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX38456.1Sucrose operon repressor ScrR LacI family. (321 aa)    
Predicted Functional Partners:
EEX37817.1
Glutamate synthase [NADPH] large chain.
    
 
 0.795
EEX35980.1
Galactose operon repressor; GalR-LacI family of transcriptional regulators.
  
     0.756
EEX35981.1
Galactose operon repressor; GalR-LacI family of transcriptional regulators.
  
     0.754
EEX35966.1
Fructose repressor FruR LacI family.
  
     0.729
EEX38457.1
Alpha-glucosidase.
 
 
  0.727
EEX38458.1
PTS system maltose and glucose-specific IIBC component.
 
  
 0.724
EEX38459.1
Exodeoxyribonuclease III.
 
     0.598
EEX37624.1
Phosphotransferase system trehalose-specific IIBC component.
  
  
 0.558
EEX35967.1
Fructose-specific phosphocarrier protein HPr/PTS system fructose-specific IIA component.
   
 
 0.540
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
   0.524
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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