Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX38490.1Hypothetical protein. (58 aa)    
Predicted Functional Partners:
EEX36753.1
Pyruvate-flavodoxin oxidoreductase.
     
 0.901
EEX37817.1
Glutamate synthase [NADPH] large chain.
    
  0.876
EEX35717.1
Phosphotransferase system fructose-specific.
     
  0.813
EEX37238.1
Fumarate hydratase class I aerobic.
     
  0.751
EEX37239.1
Fumarate hydratase class I.
     
  0.751
EEX35969.1
Phosphotransferase system fructose-specific IIB and IIC subunit.
     
  0.725
EEX38491.1
Hypothetical protein.
  
    0.593
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
     
 0.511
EEX37221.1
2-methylcitrate dehydratase FeS dependent.
     
 0.489
EEX37459.1
Aspartate/tyrosine/aromatic aminotransferase.
     
 0.482
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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