STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX38320.1Membrane protein. (430 aa)    
Predicted Functional Partners:
EEX37885.1
Lipoprotein NlpD.
 
   
 0.759
EEX35609.1
Membrane-bound metallopeptidase.
 
   
 0.714
EEX35601.1
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
 
  
 0.701
EEX36587.1
Membrane-bound lytic murein transglycosylase D precursor.
 
  
 0.598
tyrS
tyrosyl-tRNA synthetase 2 (Tyrosine--tRNA ligase 2) (TyrRS 2); Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.594
EEX38416.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.543
EEX38133.1
Multimodular transpeptidase-transglycosylase.
  
   
 0.540
mltG
Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
   
 0.488
EEX36709.1
Zinc ABC transporter-binding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.473
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
  
 0.418
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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