Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEX35831.1 | EEX38420.1 | VIB_002981 | VIB_000366 | DNA-directed RNA polymerase specialized sigma subunit. | Sigma factor RpoE negative regulatory protein RseB precursor. | 0.425 |
| EEX35831.1 | EEX38421.1 | VIB_002981 | VIB_000367 | DNA-directed RNA polymerase specialized sigma subunit. | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | 0.939 |
| EEX37766.1 | EEX38420.1 | VIB_001892 | VIB_000366 | RNA polymerase sigma-70 factor ECF subfamily. | Sigma factor RpoE negative regulatory protein RseB precursor. | 0.474 |
| EEX37766.1 | EEX38421.1 | VIB_001892 | VIB_000367 | RNA polymerase sigma-70 factor ECF subfamily. | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | 0.964 |
| EEX37851.1 | EEX38421.1 | VIB_001979 | VIB_000367 | Stringent starvation protein B. | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | 0.896 |
| EEX37858.1 | EEX37859.1 | VIB_001986 | VIB_001987 | Outer membrane stress sensor protease DegQ; Belongs to the peptidase S1C family. | Outer membrane stress sensor protease DegS. | 0.564 |
| EEX37858.1 | EEX38421.1 | VIB_001986 | VIB_000367 | Outer membrane stress sensor protease DegQ; Belongs to the peptidase S1C family. | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | 0.918 |
| EEX37859.1 | EEX37858.1 | VIB_001987 | VIB_001986 | Outer membrane stress sensor protease DegS. | Outer membrane stress sensor protease DegQ; Belongs to the peptidase S1C family. | 0.564 |
| EEX37859.1 | EEX38421.1 | VIB_001987 | VIB_000367 | Outer membrane stress sensor protease DegS. | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | 0.921 |
| EEX38420.1 | EEX35831.1 | VIB_000366 | VIB_002981 | Sigma factor RpoE negative regulatory protein RseB precursor. | DNA-directed RNA polymerase specialized sigma subunit. | 0.425 |
| EEX38420.1 | EEX37766.1 | VIB_000366 | VIB_001892 | Sigma factor RpoE negative regulatory protein RseB precursor. | RNA polymerase sigma-70 factor ECF subfamily. | 0.474 |
| EEX38420.1 | EEX38421.1 | VIB_000366 | VIB_000367 | Sigma factor RpoE negative regulatory protein RseB precursor. | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | 0.998 |
| EEX38420.1 | EEX38422.1 | VIB_000366 | VIB_000368 | Sigma factor RpoE negative regulatory protein RseB precursor. | RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.909 |
| EEX38420.1 | bamC | VIB_000366 | VIB_000753 | Sigma factor RpoE negative regulatory protein RseB precursor. | NlpB lipoprotein component of the protein assembly complex; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.720 |
| EEX38420.1 | rraB | VIB_000366 | VIB_002109 | Sigma factor RpoE negative regulatory protein RseB precursor. | Hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | 0.508 |
| EEX38420.1 | zapC | VIB_000366 | VIB_001304 | Sigma factor RpoE negative regulatory protein RseB precursor. | Hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. | 0.573 |
| EEX38421.1 | EEX35831.1 | VIB_000367 | VIB_002981 | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | DNA-directed RNA polymerase specialized sigma subunit. | 0.939 |
| EEX38421.1 | EEX37766.1 | VIB_000367 | VIB_001892 | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | RNA polymerase sigma-70 factor ECF subfamily. | 0.964 |
| EEX38421.1 | EEX37851.1 | VIB_000367 | VIB_001979 | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | Stringent starvation protein B. | 0.896 |
| EEX38421.1 | EEX37858.1 | VIB_000367 | VIB_001986 | Sigma factor RpoE negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytop [...] | Outer membrane stress sensor protease DegQ; Belongs to the peptidase S1C family. | 0.918 |
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