Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEX38437.1long-chain-fatty-acid--CoA ligase. (601 aa)    
Predicted Functional Partners:
EEX37790.1
long-chain-fatty-acid--CoA ligase.
  
  
 
0.899
EEX37282.1
Lipase precursor.
   
 
 0.873
EEX37815.1
Aerobic respiration control sensor protein ArcB.
    
  0.746
EEX38405.1
BarA sensory histidine kinase.
     
  0.744
EEX36774.1
long-chain-fatty-acid--CoA ligase.
  
 
 0.732
EEX37435.1
long-chain-fatty-acid--CoA ligase.
  
 
 0.732
EEX38438.1
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
       0.696
EEX36593.1
acyl-CoA dehydrogenase short-chain specific.
  
 0.681
EEX36934.1
acyl-CoA dehydrogenase short-chain specific.
  
 0.681
rplE
LSU ribosomal protein L5p (L11e); This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
   0.641
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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