STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
EEX38438.1Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (319 aa)    
Predicted Functional Partners:
EEX38437.1
long-chain-fatty-acid--CoA ligase.
       0.696
EEX37884.1
RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.690
EEX38439.1
Glycosyltransferase.
       0.666
EEX37305.1
Transcriptional regulator of alpha-acetolactate operon AlsR; Belongs to the LysR transcriptional regulatory family.
  
     0.664
EEX38631.1
Unsaturated fatty acid biosythesis repressor FabR; TetR family regulator.
  
 
 
 0.633
EEX38422.1
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.575
EEX37299.1
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.572
EEX37115.1
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.567
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
      
 0.562
rplT
LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
      
 0.556
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.