Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX38145.1Hypothetical protein. (258 aa)    
Predicted Functional Partners:
EEX37815.1
Aerobic respiration control sensor protein ArcB.
   
 0.774
EEX37913.1
Hypothetical protein.
  
     0.750
EEX37912.1
Hypothetical protein.
  
     0.747
EEX37715.1
Chitinase.
  
     0.689
EEX36153.1
Hypothetical protein.
  
     0.680
EEX37692.1
ABC-type amino acid transport/signal transduction systems component.
  
     0.663
EEX38405.1
BarA sensory histidine kinase.
   
 0.646
EEX38325.1
Chitin catabolic cascade sensor histidine kinase ChiS.
 
  
 0.640
EEX36172.1
Hybrid sensory histidine kinase in two-component regulatory system with EvgA.
   
 0.631
EEX38265.1
Chorismate mutase I/cyclohexadienyl dehydrogenase.
    
 0.629
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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