Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX38206.1Protein YtfJ precursor. (105 aa)    
Predicted Functional Partners:
EEX38427.1
Hypothetical protein.
 
     0.704
EEX38194.1
Hypothetical protein.
  
     0.689
EEX36987.1
Protein YciN.
  
     0.656
EEX36682.1
Hypothetical protein.
  
     0.655
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.631
EEX38209.1
Uncharacterized protein YtfM precursor.
       0.578
EEX38210.1
Uncharacterized protein YtfN.
       0.578
EEX38211.1
Hypothetical protein.
       0.576
EEX36841.1
Hypothetical protein; Belongs to the UPF0304 family.
  
     0.570
EEX37329.1
Hypothetical protein; Belongs to the UPF0263 family.
  
     0.568
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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