STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX38223.1Hypothetical protein; Displays ATPase and GTPase activities. (286 aa)    
Predicted Functional Partners:
EEX38224.1
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); COG1762.
  
  
 0.942
EEX38225.1
Ribosome hibernation protein YhbH.
 
  
 0.897
EEX37980.1
Cytoplasmic axial filament protein CafA and Ribonuclease G.
 
 
 
 0.886
EEX38222.1
Phosphocarrier protein nitrogen regulation associated.
  
  
 0.869
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.867
EEX36780.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.816
EEX38226.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.771
EEX35715.1
Putative PTS system nitrogen regulatory IIA component.
  
  
 0.750
EEX38228.1
LptA protein; Essential for LPS transport across the periplasm.
  
    0.609
EEX35717.1
Phosphotransferase system fructose-specific.
  
  
 0.602
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.