Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEX38222.1 | EEX38226.1 | VIB_000596 | VIB_000600 | Phosphocarrier protein nitrogen regulation associated. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.801 |
| EEX38222.1 | EEX38227.1 | VIB_000596 | VIB_000601 | Phosphocarrier protein nitrogen regulation associated. | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | 0.673 |
| EEX38222.1 | EEX38228.1 | VIB_000596 | VIB_000602 | Phosphocarrier protein nitrogen regulation associated. | LptA protein; Essential for LPS transport across the periplasm. | 0.621 |
| EEX38226.1 | EEX38222.1 | VIB_000600 | VIB_000596 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Phosphocarrier protein nitrogen regulation associated. | 0.801 |
| EEX38226.1 | EEX38227.1 | VIB_000600 | VIB_000601 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | 0.632 |
| EEX38226.1 | EEX38228.1 | VIB_000600 | VIB_000602 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | LptA protein; Essential for LPS transport across the periplasm. | 0.638 |
| EEX38227.1 | EEX38222.1 | VIB_000601 | VIB_000596 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | Phosphocarrier protein nitrogen regulation associated. | 0.673 |
| EEX38227.1 | EEX38226.1 | VIB_000601 | VIB_000600 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.632 |
| EEX38227.1 | EEX38228.1 | VIB_000601 | VIB_000602 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | LptA protein; Essential for LPS transport across the periplasm. | 0.971 |
| EEX38227.1 | EEX38230.1 | VIB_000601 | VIB_000604 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | Arabinose 5-phosphate isomerase. | 0.734 |
| EEX38227.1 | EEX38251.1 | VIB_000601 | VIB_000625 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | Predicted permease. | 0.985 |
| EEX38227.1 | EEX38252.1 | VIB_000601 | VIB_000626 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | Putative membrane protein. | 0.987 |
| EEX38227.1 | lptD | VIB_000601 | VIB_002088 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.728 |
| EEX38227.1 | lpxA | VIB_000601 | VIB_000677 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.788 |
| EEX38227.1 | lpxB | VIB_000601 | VIB_000678 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.704 |
| EEX38227.1 | lpxD | VIB_000601 | VIB_000675 | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.719 |
| EEX38228.1 | EEX38222.1 | VIB_000602 | VIB_000596 | LptA protein; Essential for LPS transport across the periplasm. | Phosphocarrier protein nitrogen regulation associated. | 0.621 |
| EEX38228.1 | EEX38226.1 | VIB_000602 | VIB_000600 | LptA protein; Essential for LPS transport across the periplasm. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.638 |
| EEX38228.1 | EEX38227.1 | VIB_000602 | VIB_000601 | LptA protein; Essential for LPS transport across the periplasm. | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | 0.971 |
| EEX38228.1 | EEX38251.1 | VIB_000602 | VIB_000625 | LptA protein; Essential for LPS transport across the periplasm. | Predicted permease. | 0.425 |
page 1 of 3