Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX38228.1LptA protein; Essential for LPS transport across the periplasm. (99 aa)    
Predicted Functional Partners:
EEX38227.1
Lipopolysaccharide ABC transporter ATP-binding protein LptB.
  
  
 0.992
lptD
Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.926
EEX38226.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.774
EEX38223.1
Hypothetical protein; Displays ATPase and GTPase activities.
  
    0.751
EEX38224.1
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); COG1762.
  
  
 0.728
EEX36614.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.726
EEX38222.1
Phosphocarrier protein nitrogen regulation associated.
  
  
 0.723
lptE
LPS-assembly lipoprotein RlpB precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
  
 0.720
EEX38225.1
Ribosome hibernation protein YhbH.
     
 0.715
EEX38235.1
Uncharacterized ABC transporter auxiliary component YrbC.
 
  
 0.675
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.