Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
EEX38235.1Uncharacterized ABC transporter auxiliary component YrbC. (212 aa)    
Predicted Functional Partners:
EEX38234.1
Uncharacterized ABC transporter, periplasmic component YrbD.
 
 0.999
EEX38232.1
Uncharacterized ABC transporter ATP-binding protein YrbF.
 
 
 0.989
EEX38233.1
Uncharacterized ABC transporter permease component YrbE.
 
 
 0.987
EEX36729.1
Surface lipoprotein VacJ.
 
 
 
 0.933
rraB
Hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
     0.683
zapD
Hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.679
EEX38228.1
LptA protein; Essential for LPS transport across the periplasm.
 
  
 0.675
EEX38238.1
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
 
     0.671
EEX38236.1
BolA/YrbA family protein; Belongs to the BolA/IbaG family.
       0.670
EEX37200.1
Paraquat-inducible protein B.
     
 0.669
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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