STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX38253.1HD-GYP domain-containing protein. (418 aa)    
Predicted Functional Partners:
EEX38295.1
C-di-GMP phosphodiesterase A-related protein.
 
   
 0.652
EEX38006.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.623
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.622
EEX36824.1
NADH oxidoreductase Hcr.
     
 0.608
EEX36103.1
Flavodoxin reductases, family 1.
     
 0.608
EEX36403.1
GGDEF family protein.
 
 
 
 0.577
EEX37925.1
Sensory box/GGDEF family protein.
 
 
 
 0.574
EEX35951.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
  
  0.567
EEX36753.1
Pyruvate-flavodoxin oxidoreductase.
  
   0.560
EEX35853.1
Diguanylate cyclase with PAS/PAC sensor.
 
 
 0.555
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.