Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rimKRibosomal protein S6 glutaminyl transferase; Belongs to the RimK family. (301 aa)    
Predicted Functional Partners:
EEX36545.1
Predicted deacylase.
 
     0.961
EEX37817.1
Glutamate synthase [NADPH] large chain.
    
 0.776
EEX35970.1
Hypothetical protein.
 
     0.764
EEX37002.1
Hypothetical protein.
 
     0.738
argA
Acetylglutamate kinase; COG0548.
    
 0.617
EEX36547.1
Aminoacyl-histidine dipeptidase (Peptidase D).
    
 0.609
arcA
Arginine deiminase.
      
 0.556
fbp
Fructose-1,6-bisphosphatase type I; Belongs to the FBPase class 1 family.
      
 0.546
fhs
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
      
 0.545
rplW
LSU ribosomal protein L23p (L23Ae); One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.480
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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