Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEX36089.1 | EEX36650.1 | VIB_002403 | VIB_000755 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | D,D-carboxypeptidase-related protein. | 0.533 |
EEX36089.1 | EEX37616.1 | VIB_002403 | VIB_001741 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.579 |
EEX36089.1 | EEX38356.1 | VIB_002403 | VIB_000301 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Multimodular transpeptidase-transglycosylase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.555 |
EEX36089.1 | mrdA | VIB_002403 | VIB_001738 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Penicillin-binding protein 2 (PBP-2); Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.573 |
EEX36541.1 | EEX36592.1 | VIB_000641 | VIB_000693 | Hypothetical protein. | Hypothetical protein. | 0.511 |
EEX36541.1 | EEX36650.1 | VIB_000641 | VIB_000755 | Hypothetical protein. | D,D-carboxypeptidase-related protein. | 0.607 |
EEX36592.1 | EEX36541.1 | VIB_000693 | VIB_000641 | Hypothetical protein. | Hypothetical protein. | 0.511 |
EEX36592.1 | EEX36650.1 | VIB_000693 | VIB_000755 | Hypothetical protein. | D,D-carboxypeptidase-related protein. | 0.641 |
EEX36592.1 | EEX38356.1 | VIB_000693 | VIB_000301 | Hypothetical protein. | Multimodular transpeptidase-transglycosylase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.620 |
EEX36649.1 | EEX36650.1 | VIB_000754 | VIB_000755 | Hypothetical protein. | D,D-carboxypeptidase-related protein. | 0.610 |
EEX36649.1 | EEX36652.1 | VIB_000754 | VIB_000757 | Hypothetical protein. | A glutathione-dependent thiol reductase; Belongs to the ArsC family. | 0.610 |
EEX36649.1 | dapE | VIB_000754 | VIB_000756 | Hypothetical protein. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.610 |
EEX36650.1 | EEX36089.1 | VIB_000755 | VIB_002403 | D,D-carboxypeptidase-related protein. | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.533 |
EEX36650.1 | EEX36541.1 | VIB_000755 | VIB_000641 | D,D-carboxypeptidase-related protein. | Hypothetical protein. | 0.607 |
EEX36650.1 | EEX36592.1 | VIB_000755 | VIB_000693 | D,D-carboxypeptidase-related protein. | Hypothetical protein. | 0.641 |
EEX36650.1 | EEX36649.1 | VIB_000755 | VIB_000754 | D,D-carboxypeptidase-related protein. | Hypothetical protein. | 0.610 |
EEX36650.1 | EEX36652.1 | VIB_000755 | VIB_000757 | D,D-carboxypeptidase-related protein. | A glutathione-dependent thiol reductase; Belongs to the ArsC family. | 0.800 |
EEX36650.1 | EEX36653.1 | VIB_000755 | VIB_000758 | D,D-carboxypeptidase-related protein. | Hypothetical protein. | 0.552 |
EEX36650.1 | EEX37616.1 | VIB_000755 | VIB_001741 | D,D-carboxypeptidase-related protein. | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.533 |
EEX36650.1 | EEX38356.1 | VIB_000755 | VIB_000301 | D,D-carboxypeptidase-related protein. | Multimodular transpeptidase-transglycosylase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.613 |
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