STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX36729.1Surface lipoprotein VacJ. (250 aa)    
Predicted Functional Partners:
EEX38317.1
Outer membrane protein OmpU.
   
 
 0.816
EEX36854.1
Outer membrane protein OmpT.
   
 
 0.816
EEX37594.1
Outer membrane porin protein.
   
 
 0.816
EEX36386.1
Outer membrane protein.
   
 
 0.816
EEX38234.1
Uncharacterized ABC transporter, periplasmic component YrbD.
 
   
 0.811
EEX38235.1
Uncharacterized ABC transporter auxiliary component YrbC.
 
 
 
 0.766
EEX37762.1
Hypothetical protein.
    
 
 0.759
EEX37764.1
Hypothetical protein.
    
 
 0.759
EEX38233.1
Uncharacterized ABC transporter permease component YrbE.
 
   
 0.512
EEX36998.1
Chromosome partition protein MukB; Belongs to the SMC family. MukB subfamily.
  
    0.477
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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