Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX36729.1Surface lipoprotein VacJ. (250 aa)    
Predicted Functional Partners:
EEX38235.1
Uncharacterized ABC transporter auxiliary component YrbC.
 
 
 
 0.933
EEX38234.1
Uncharacterized ABC transporter, periplasmic component YrbD.
 
   
 0.870
EEX38317.1
Outer membrane protein OmpU.
   
 
 0.761
EEX36854.1
Outer membrane protein OmpT.
   
 
 0.761
EEX37594.1
Outer membrane porin protein.
   
 
 0.761
EEX36386.1
Outer membrane protein.
   
 
 0.761
lptD
Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.679
EEX37762.1
Hypothetical protein.
    
   0.667
EEX37764.1
Hypothetical protein.
    
   0.667
bamD
Probable component of the lipoprotein assembly complex (forms a complex with YaeT YfgL and NlpB); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.666
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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