Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEX36833.1 | EEX36836.1 | VIB_000939 | VIB_000942 | Predicted hydrolase of the metallo-beta-lactamase superfamily. | Hypothetical protein; Belongs to the UPF0434 family. | 0.759 |
| EEX36833.1 | infB | VIB_000939 | VIB_000252 | Predicted hydrolase of the metallo-beta-lactamase superfamily. | Translation initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.437 |
| EEX36833.1 | kdsB | VIB_000939 | VIB_000943 | Predicted hydrolase of the metallo-beta-lactamase superfamily. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.725 |
| EEX36833.1 | lpxK | VIB_000939 | VIB_000941 | Predicted hydrolase of the metallo-beta-lactamase superfamily. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.753 |
| EEX36833.1 | msbA | VIB_000939 | VIB_000940 | Predicted hydrolase of the metallo-beta-lactamase superfamily. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.725 |
| EEX36836.1 | EEX36833.1 | VIB_000942 | VIB_000939 | Hypothetical protein; Belongs to the UPF0434 family. | Predicted hydrolase of the metallo-beta-lactamase superfamily. | 0.759 |
| EEX36836.1 | kdsB | VIB_000942 | VIB_000943 | Hypothetical protein; Belongs to the UPF0434 family. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.878 |
| EEX36836.1 | lpxK | VIB_000942 | VIB_000941 | Hypothetical protein; Belongs to the UPF0434 family. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.839 |
| EEX36836.1 | msbA | VIB_000942 | VIB_000940 | Hypothetical protein; Belongs to the UPF0434 family. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.785 |
| EEX36913.1 | EEX37054.1 | VIB_001020 | VIB_001165 | ABC transporter ATP-binding protein. | Putative transport system membrane protein. | 0.791 |
| EEX36913.1 | EEX38233.1 | VIB_001020 | VIB_000607 | ABC transporter ATP-binding protein. | Uncharacterized ABC transporter permease component YrbE. | 0.495 |
| EEX36913.1 | msbA | VIB_001020 | VIB_000940 | ABC transporter ATP-binding protein. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.555 |
| EEX37054.1 | EEX36913.1 | VIB_001165 | VIB_001020 | Putative transport system membrane protein. | ABC transporter ATP-binding protein. | 0.791 |
| EEX37054.1 | msbA | VIB_001165 | VIB_000940 | Putative transport system membrane protein. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.678 |
| EEX38233.1 | EEX36913.1 | VIB_000607 | VIB_001020 | Uncharacterized ABC transporter permease component YrbE. | ABC transporter ATP-binding protein. | 0.495 |
| EEX38233.1 | msbA | VIB_000607 | VIB_000940 | Uncharacterized ABC transporter permease component YrbE. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.616 |
| acpP | infB | VIB_001613 | VIB_000252 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Translation initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.822 |
| acpP | msbA | VIB_001613 | VIB_000940 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.597 |
| dnaK | infB | VIB_001795 | VIB_000252 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Translation initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.426 |
| dnaK | msbA | VIB_001795 | VIB_000940 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.698 |
page 1 of 3