STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX36854.1Outer membrane protein OmpT. (280 aa)    
Predicted Functional Partners:
EEX36729.1
Surface lipoprotein VacJ.
   
 
 0.816
EEX36461.1
Outer membrane protein A precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 
 0.762
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.650
btuB
Outer membrane vitamin B12 receptor BtuB; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily.
    
 
 0.533
EEX36855.1
Putative secreted protein; Belongs to the UPF0319 family.
       0.501
EEX37858.1
Outer membrane stress sensor protease DegQ; Belongs to the peptidase S1C family.
    
 
 0.497
EEX37859.1
Outer membrane stress sensor protease DegS.
    
 
 0.497
EEX37086.1
Hypothetical protein.
    
 
 0.482
EEX36144.1
Oligogalacturonate lyase.
    
 
 0.482
EEX38607.1
Sensory box/GGDEF family protein.
  
   0.472
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.