STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnaATryptophanase; Belongs to the beta-eliminating lyase family. (471 aa)    
Predicted Functional Partners:
EEX37771.1
4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme.
    
   0.747
EEX36889.1
Tryptophan-specific transport protein.
 
  
 0.710
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.530
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
 0.504
hutH
Histidine ammonia-lyase.
     
 0.502
EEX36940.1
Glutamate decarboxylase eukaryotic type.
     
 0.492
EEX37268.1
Diaminobutyrate-pyruvate transaminase/L-2,4-diaminobutyrate decarboxylase.
    
 0.426
EEX37247.1
Aspartate aminotransferase.
     
 0.412
EEX35971.1
Aspartate aminotransferase.
     
 0.412
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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