Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEX36978.1Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. (227 aa)    
Predicted Functional Partners:
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.679
EEX36979.1
Isocitrate dehydrogenase [NADP]; Most likely function alternative not yet resolved; monomeric isocitrate dehydrogenase [NADP]; Belongs to the monomeric-type IDH family.
       0.665
EEX36850.1
Exodeoxyribonuclease III.
  
    0.657
cmk
Cytidylate kinase.
  
  
 0.642
EEX37189.1
23S rRNA (guanine-N-2-) -methyltransferase RlmL; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
 
 0.574
EEX38256.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 
 0.465
EEX37359.1
Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
 
 
 
0.460
rlmI
Hypothetical protein; Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA.
 
 
 
 0.432
rplD
LSU ribosomal protein L4p (L1e); Forms part of the polypeptide exit tunnel.
  
 
 0.407
EEX36223.1
Hypothetical protein.
    
   0.407
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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