Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX37109.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
 
 
 0.728
EEX37107.1
DnaK-related protein; Belongs to the heat shock protein 70 family.
       0.666
EEX37108.1
Hypothetical protein.
       0.666
EEX37106.1
DnaK-related protein.
       0.633
EEX37327.1
Hypothetical protein.
  
     0.600
EEX36456.1
MoxR-like ATPase.
  
     0.579
EEX36873.1
Hypothetical protein; Belongs to the UPF0149 family.
 
     0.557
EEX36232.1
Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family.
  
     0.543
EEX37051.1
Hypothetical protein.
  
     0.521
EEX37110.1
Methyl-accepting chemotaxis transducer.
       0.508
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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