STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX37117.1Rtn protein. (497 aa)    
Predicted Functional Partners:
EEX36057.1
Sensory box/GGDEF family protein.
 
   
 0.923
EEX35853.1
Diguanylate cyclase with PAS/PAC sensor.
 
     0.892
EEX36286.1
Diguanylate cyclase (GGDEF domain).
   
 0.807
EEX37052.1
GGDEF domain protein.
 
   
 0.803
EEX37633.1
GGDEF domain family protein.
 
   
 0.782
EEX36306.1
GGDEF family protein.
 
   
 0.782
EEX37998.1
MSHA biogenesis protein MshH.
  
   
 0.781
EEX36403.1
GGDEF family protein.
 
   
 0.781
EEX35854.1
GGDEF family protein.
 
   
 0.779
EEX37925.1
Sensory box/GGDEF family protein.
  
   
 0.775
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.