Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEX37121.1Maleylacetoacetate isomerase/glutathione S-transferase. (213 aa)    
Predicted Functional Partners:
EEX37119.1
Homogentisate 1,2-dioxygenase.
 
 
 0.992
EEX37120.1
2-keto-4-pentenoate hydratase.
 
 
 0.988
EEX37118.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.973
EEX37852.1
Stringent starvation protein A.
  
 
 
 0.792
EEX36445.1
Phenylalanine-4-hydroxylase.
 
  
 0.792
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.771
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.743
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.724
lysS
lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.
   
  0.720
EEX35717.1
Phosphotransferase system fructose-specific.
    
   0.697
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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