Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX37145.1Probable amino acid ABC transporter. (255 aa)    
Predicted Functional Partners:
EEX37815.1
Aerobic respiration control sensor protein ArcB.
   
 0.774
EEX36251.1
Extracellular solute-binding protein, family 3.
  
     0.742
EEX35828.1
Amino acid ABC transporter amino acid-binding protein.
  
     0.729
EEX36153.1
Hypothetical protein.
  
     0.710
EEX37144.1
Response regulator.
 
  
  0.694
EEX37060.1
Hypothetical protein.
  
     0.693
EEX38500.1
Hypothetical protein.
  
     0.670
EEX38405.1
BarA sensory histidine kinase.
   
 0.646
EEX35896.1
Hypothetical protein.
  
     0.637
EEX36172.1
Hybrid sensory histidine kinase in two-component regulatory system with EvgA.
   
 0.631
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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