Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX37200.1Paraquat-inducible protein B. (874 aa)    
Predicted Functional Partners:
EEX37199.1
Paraquat-inducible protein A.
 
 
 0.992
EEX37198.1
ABC-type multidrug transport system ATPase and permease component.
 
     0.779
EEX38232.1
Uncharacterized ABC transporter ATP-binding protein YrbF.
    
 0.755
rsmF
Ribosomal RNA small subunit methyltransferase F; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
       0.743
EEX38234.1
Uncharacterized ABC transporter, periplasmic component YrbD.
     
 0.737
EEX38233.1
Uncharacterized ABC transporter permease component YrbE.
    
 0.717
EEX37197.1
Free methionine-(R)-sulfoxide reductase fRMsr.
   
   0.690
EEX38235.1
Uncharacterized ABC transporter auxiliary component YrbC.
     
 0.669
EEX37195.1
Tail-specific protease precursor.
 
     0.663
proQ
ProQ protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
       0.623
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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