Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX37217.1Hypothetical cytosolic protein. (260 aa)    
Predicted Functional Partners:
EEX35609.1
Membrane-bound metallopeptidase.
   
   0.689
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.675
EEX37131.1
Methyl-accepting chemotaxis sensory transducer.
    
 0.613
EEX35659.1
Signal transduction histidine kinase.
    
  0.607
EEX37216.1
Hypothetical protein.
 
    
0.603
EEX36607.1
Hypothetical protein.
   
 
 0.572
EEX37139.1
tPR domain protein putative component of TonB system.
   
 0.565
EEX36308.1
TPR domain protein in aerotolerance operon.
   
 0.565
EEX37195.1
Tail-specific protease precursor.
  
   0.540
EEX36736.1
Methyl-accepting chemotaxis protein.
     
  0.518
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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