STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX37326.1Serine transporter. (428 aa)    
Predicted Functional Partners:
EEX38613.1
Non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase; Belongs to the Dps family.
    
   0.724
EEX36170.1
Non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase; Belongs to the Dps family.
    
   0.724
kdkA
3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.617
apaH
Bis(5'-nucleosyl)-tetraphosphatase symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.606
EEX36889.1
Tryptophan-specific transport protein.
  
   
 0.436
EEX37325.1
DNA polymerase II.
       0.423
EEX37241.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.412
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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