Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX37431.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
EEX36828.1
Hypothetical protein.
  
     0.597
EEX37858.1
Outer membrane stress sensor protease DegQ; Belongs to the peptidase S1C family.
    
 
 0.432
EEX37859.1
Outer membrane stress sensor protease DegS.
    
 
 0.432
EEX38198.1
uroporphyrinogen-III methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.415
EEX37432.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.409
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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