Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX37551.1Regulatory protein LuxO. (143 aa)    
Predicted Functional Partners:
EEX37553.1
Regulatory protein LuxO.
 
     0.974
EEX37550.1
Phosphorelay protein LuxU.
  
 
 0.973
EEX38226.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.898
EEX37815.1
Aerobic respiration control sensor protein ArcB.
  
 0.882
EEX36753.1
Pyruvate-flavodoxin oxidoreductase.
    
 0.866
EEX36172.1
Hybrid sensory histidine kinase in two-component regulatory system with EvgA.
  
 0.855
EEX36826.1
Anaerobic nitric oxide reductase transcription regulator NorR.
  
 
  0.831
EEX35659.1
Signal transduction histidine kinase.
   
 0.828
EEX38325.1
Chitin catabolic cascade sensor histidine kinase ChiS.
  
 0.822
EEX36318.1
Anaerobic nitric oxide reductase transcription regulator NorR.
  
 
  0.820
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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