Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EEX37638.1Glycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
EEX37637.1
Alpha/beta hydrolase.
       0.842
rlmM
Putative RNA 2'-O-ribose methyltransferase mtfA; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.663
EEX37299.1
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.629
EEX37745.1
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.616
EEX36344.1
Transcriptional regulator LysR family.
  
     0.602
EEX38132.1
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.598
fadR
Fatty acid metabolism regulator protein; Multifunctional regulator of fatty acid metabolism.
  
    0.567
EEX35712.1
Regulatory protein CysB; Belongs to the LysR transcriptional regulatory family.
  
   
 0.549
EEX36816.1
Hypothetical protein; Belongs to the UPF0352 family.
  
     0.504
EEX36442.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.504
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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