Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX37765.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
EEX37766.1
RNA polymerase sigma-70 factor ECF subfamily.
 
 
 0.989
EEX38422.1
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.765
EEX36960.1
Amine oxidase flavin-containing.
 
  
 0.764
EEX37767.1
Hypothetical protein; Similar to the N-terminal domain of Lon protease.
 
   
 0.740
EEX35831.1
DNA-directed RNA polymerase specialized sigma subunit.
  
 
 0.724
EEX36963.1
Putative lipoprotein.
 
   
 0.632
EEX36961.1
Hypothetical protein.
 
  
 0.576
EEX36197.1
Hypothetical protein.
     
 0.468
EEX36962.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.459
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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