Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX37919.1Tn7-like transposition protein C. (549 aa)    
Predicted Functional Partners:
EEX37918.1
Tn7-like transposition protein D.
 
 
   0.988
EEX37921.1
Tn7-like transposition protein A.
 
 
 
 0.986
EEX37920.1
Tn7-like transposition protein B.
 
 
 0.978
EEX37917.1
Hypothetical protein.
 
   
 0.949
EEX38568.1
Tn7-like transposition protein A.
 
 
 
 0.943
EEX38571.1
Transposition protein TnsD-related protein.
 
 
   0.914
EEX38569.1
Tn7-like transposition protein B.
 
 
 0.910
glmS
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.527
EEX38531.1
Transposase IS605 OrfB family.
    
   0.512
rpsO
SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.512
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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