STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX37942.1Type IV pilus (Tfp) assembly protein ATPase component PilU. (368 aa)    
Predicted Functional Partners:
EEX38382.1
Leader peptidase (Prepilin peptidase)/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.831
EEX37943.1
Twitching motility protein PilT.
 
  
0.825
EEX38381.1
Type 4 fimbrial assembly protein PilC.
 
   
 0.798
EEX37990.1
MSHA biogenesis protein MshG.
 
   
 0.797
EEX38134.1
Hypothetical protein.
  
  
 0.788
EEX38040.1
General secretion pathway protein F.
 
   
 0.777
EEX38137.1
Type IV pilus biogenesis protein PilQ.
  
   
 0.687
EEX38379.1
Type IV pilin PilA; Belongs to the N-Me-Phe pilin family.
  
   
 0.616
EEX37944.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.615
EEX35665.1
LysM domain-containing protein.
  
    0.526
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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