rplU protein (Vibrio metschnikovii) - STRING interaction network

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rplU

LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)

Predicted Functional Partners:

rpmA

0.999

rplS

0.998

rplM

0.997

rplI

0.997

rpmB

0.997

rpsT

0.996

rpsI

0.996

rplT

0.996

rpmG

0.996

rpsL

0.996

Your Current Organism:

Vibrio metschnikovii

NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplI	rplM	VIB_002153	VIB_001983	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.996
rplI	rplS	VIB_002153	VIB_001988	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.996
rplI	rplT	VIB_002153	VIB_002781	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplI	rplU	VIB_002153	VIB_002099	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplI	rpmA	VIB_002153	VIB_002098	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.994
rplI	rpmB	VIB_002153	VIB_002948	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.994
rplI	rpmG	VIB_002153	VIB_002947	LSU ribosomal protein L9p; Binds to the 23S rRNA.	LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.	0.990
rplI	rpsI	VIB_002153	VIB_001982	LSU ribosomal protein L9p; Binds to the 23S rRNA.	SSU ribosomal protein S9p (S16e); Belongs to the universal ribosomal protein uS9 family.	0.996
rplI	rpsL	VIB_002153	VIB_003067	LSU ribosomal protein L9p; Binds to the 23S rRNA.	SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.989
rplI	rpsT	VIB_002153	VIB_000224	LSU ribosomal protein L9p; Binds to the 23S rRNA.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.981
rplM	rplI	VIB_001983	VIB_002153	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L9p; Binds to the 23S rRNA.	0.996
rplM	rplS	VIB_001983	VIB_001988	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplM	rplT	VIB_001983	VIB_002781	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.998
rplM	rplU	VIB_001983	VIB_002099	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rpmA	VIB_001983	VIB_002098	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplM	rpmB	VIB_001983	VIB_002948	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.996
rplM	rpmG	VIB_001983	VIB_002947	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.	0.996
rplM	rpsI	VIB_001983	VIB_001982	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S9p (S16e); Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsL	VIB_001983	VIB_003067	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.998
rplM	rpsT	VIB_001983	VIB_000224	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.995

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