STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX37969.1Arginine/ornithine antiporter ArcD. (468 aa)    
Predicted Functional Partners:
EEX38449.1
Alpha-amylase precursor.
   
 0.850
EEX38457.1
Alpha-glucosidase.
   
 0.850
EEX37623.1
Trehalose-6-phosphate hydrolase.
   
 0.850
EEX36315.1
Glycosidase.
   
 0.850
EEX36409.1
Periplasmic alpha-amylase.
   
 0.850
arcA
Arginine deiminase.
 
  
 0.821
EEX37970.1
Hypothetical protein.
       0.773
EEX38077.1
Carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.723
EEX38259.1
Chorismate mutase I/prephenate dehydratase.
   
 0.721
kdkA
3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.719
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.