Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX37985.1MshO. (259 aa)    
Predicted Functional Partners:
EEX37986.1
MSHA pilin protein MshD.
 
     0.953
EEX37987.1
MSHA pilin protein MshC.
 
     0.941
EEX37988.1
MSHA pilin protein MshA.
 
   
 0.899
EEX37989.1
MSHA pilin protein MshB.
 
     0.878
EEX37994.1
Type II secretory pathway component PulD; COG1450.
 
 
 0.871
EEX37996.1
MSHA biogenesis protein MshJ.
 
   
 0.809
EEX37984.1
MSHA biogenesis protein MshQ.
 
   
 0.804
EEX37992.1
MSHA biogenesis protein MshN.
 
     0.800
EEX37991.1
MSHA biogenesis protein MshE.
 
 0.798
EEX37990.1
MSHA biogenesis protein MshG.
 
  
 0.775
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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