STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX37988.1MSHA pilin protein MshA. (155 aa)    
Predicted Functional Partners:
EEX37991.1
MSHA biogenesis protein MshE.
 
 0.921
EEX37985.1
MshO.
 
   
 0.906
EEX37986.1
MSHA pilin protein MshD.
 
   
 0.906
EEX37989.1
MSHA pilin protein MshB.
 
  
 
0.890
EEX37994.1
Type II secretory pathway component PulD; COG1450.
 
  
 0.865
EEX37990.1
MSHA biogenesis protein MshG.
 
  
 0.854
EEX37987.1
MSHA pilin protein MshC.
 
     0.850
EEX37992.1
MSHA biogenesis protein MshN.
 
    0.844
EEX38042.1
General secretion pathway protein K.
  
 
 0.841
EEX37996.1
MSHA biogenesis protein MshJ.
 
   
 0.812
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.