STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX37996.1MSHA biogenesis protein MshJ. (216 aa)    
Predicted Functional Partners:
EEX37997.1
MSHA biogenesis protein MshI.
 
     0.954
EEX37994.1
Type II secretory pathway component PulD; COG1450.
 
  
 0.899
EEX37988.1
MSHA pilin protein MshA.
 
   
 0.883
EEX37989.1
MSHA pilin protein MshB.
 
   
 0.880
EEX37986.1
MSHA pilin protein MshD.
 
   
 0.878
EEX37992.1
MSHA biogenesis protein MshN.
 
     0.868
EEX37985.1
MshO.
 
   
 0.809
EEX37984.1
MSHA biogenesis protein MshQ.
 
   
 0.800
EEX37993.1
Type II secretory pathway component ExeA (predicted ATPase); COG3267.
 
    0.782
EEX37987.1
MSHA pilin protein MshC.
 
   
 0.734
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.