STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX38003.1Lipid A core-O-antigen ligase. (542 aa)    
Predicted Functional Partners:
EEX38615.1
Hypothetical protein.
  
     0.738
EEX36386.1
Outer membrane protein.
  
    0.717
EEX35760.1
UDP-glucose 4-epimerase.
 
  
 0.712
EEX38140.1
Type II secretory pathway component ExeA (predicted ATPase); COG3267.
  
     0.690
EEX37794.1
Smp-like protein.
  
     0.666
EEX38317.1
Outer membrane protein OmpU.
  
    0.663
EEX36458.1
Hypothetical protein.
  
     0.660
EEX37824.1
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.654
EEX36873.1
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.649
EEX37358.1
Hypothetical protein.
  
     0.647
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.