Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX35864.1TraF-related protein. (353 aa)    
Predicted Functional Partners:
EEX35865.1
Hypothetical protein; Belongs to the UPF0181 family.
       0.780
EEX35861.1
Signal transduction histidine kinase.
 
     0.739
EEX37314.1
Hypothetical protein.
  
     0.715
EEX35862.1
Transcriptional regulator.
       0.701
EEX35863.1
Hypothetical protein.
       0.701
EEX38615.1
Hypothetical protein.
  
     0.673
EEX36375.1
Outer membrane lipoprotein.
  
     0.639
lptD
Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.627
EEX35678.1
Acetolactate synthase small subunit.
  
     0.624
EEX36623.1
Flagellar hook-associated protein FlgL.
  
   
 0.620
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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