STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX35957.1Utilization protein for catechol-siderophore. (262 aa)    
Predicted Functional Partners:
EEX36336.1
Isochorismatase of siderophore biosynthesis.
 
  
 0.903
EEX36337.1
2,3-dihydroxybenzoate-AMP ligase.
 
  
 0.807
EEX36208.1
ABC transporter ATP-binding protein.
 
 0.741
EEX36330.1
Non-ribosomal peptide synthetase modules and related protein.
 
  
 0.714
msbA
Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 0.707
EEX37101.1
ABC-type polar amino acid transport system ATPase component.
  
 0.707
EEX37102.1
ABC-type polar amino acid transport system ATPase component.
  
 0.707
EEX37198.1
ABC-type multidrug transport system ATPase and permease component.
  
 0.707
EEX36332.1
Ferric enterobactin transport system permease protein fepG; TC 3.A.1.14.2; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
  0.598
EEX36331.1
ABC transporter ATP-binding protein.
 
 
 0.557
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.