STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speABiosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (636 aa)    
Predicted Functional Partners:
EEX36090.1
Agmatinase; Belongs to the arginase family.
  
 
 0.963
argH
Argininosuccinate lyase; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
     
 0.810
EEX35719.1
Lysine decarboxylase.
     
 0.639
EEX37459.1
Aspartate/tyrosine/aromatic aminotransferase.
  
 
  0.624
EEX36304.1
Arginine N-succinyltransferase.
  
  
  0.621
arcA
Arginine deiminase.
    
  0.617
hutG
Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
  
 
 0.562
EEX36211.1
Arginase/agmatinase/formimionoglutamate hydrolase arginase family.
  
 
 0.562
argA
Acetylglutamate kinase; COG0548.
    
 0.507
EEX37266.1
Carboxynorspermidine decarboxylase putative; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.489
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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