Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX36132.1Pectinesterase. (854 aa)    
Predicted Functional Partners:
EEX36134.1
Exopolygalacturonate lyase.
 
 0.888
EEX37264.1
Hypothetical protein.
  
 0.768
EEX36174.1
Invasin.
  
 0.768
EEX36175.1
Invasin.
  
 0.768
EEX35747.1
Large exoprotein involved in heme utilization or adhesion.
  
 0.672
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.668
EEX36011.1
Predicted ABC-type transport system permease component.
   
   0.619
EEX36012.1
ABC transporter ATP-binding protein.
   
   0.619
EEX36133.1
Methyl-accepting chemotaxis protein.
       0.590
EEX37984.1
MSHA biogenesis protein MshQ.
    
  0.573
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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